This is the blog section. It has two categories: News and Releases.
Files in these directories will be listed in reverse chronological order.
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This is the blog section. It has two categories: News and Releases.
Files in these directories will be listed in reverse chronological order.
Current and previous releases of model, instructional and poster datasets.
All current releases of datasets to be used in conjunction with modules for modelling people (the Spring To Life model), places (the Springtides model), platforms (the First Bounce model) and programs (the On Target model).
Releases of the datasets that can be used with modules for modelling people are reproduced below.
Releases of the datasets that can be used with modules for modelling places are reproduced below.
Date | Dataset | Version | Number of files |
---|---|---|---|
25-May-2022 | Australian demographic input parameters for Springtides model | 1.2 | 5 |
25-May-2022 | Springtides reports for Local Government Areas in the North West of Melbourne | 1.1 | 54 |
18-Mar-2022 | Australian demographic input parameters for Springtides model | 1.1 | 5 |
17-Mar-2022 | Springtides reports for Local Government Areas in the North West of Melbourne | 1.0 | 54 |
15-Apr-2021 | Australian demographic input parameters for Springtides model | 1.0 | 5 |
Releases of the datasets that are intended inputs or outputs of hypothetical applications of modules are reproduced below. Note these datasets are toy / fake / synthetic data and are for instructional uses only - they are not for use in models to inform decision making.
Releases of the dataset of posters from academic conferences are reproduced below.
Date | Dataset | Version | Number of files |
---|---|---|---|
25-May-2022 | readyforwhatsnext posters | 1.2 | 2 |
18-Mar-2022 | readyforwhatsnext posters | 1.1 | 2 |
25-Feb-2021 | readyforwhatsnext posters | 1.0 | 2 |
All current and previous releases of programs and subroutines.
Currently available (as at 08-Jun-2024) releases of analysis programs are described below.
Date | Program | Release | Description |
---|---|---|---|
27-Oct-2022 | dce_sa_analysis | 0.1.1 | A self-documenting R Markdown program for analysing responses to a discrete choice experiment exploring the online help-seeking preferences of socially anxious young people. |
27-Oct-2022 | dce_sa_analysis | 0.1 | version 0.1 |
26-Oct-2022 | dce_sa_design | 0.0.9.3 | An R Markdown program to create the experimental design for a Discrete Choice Experiment (DCE) exploring online help seeking in socially anxious young people.This release uses functions from the mychoice R package (https://github.com/ready4-dev/mychoice). |
26-Oct-2022 | dce_sa_design | 0.0.0.3 | version 0.0.9.3 |
19-Oct-2022 | dce_sa_analysis | 0.0.9.1 | An R Markdown program to analyse responses to a Discrete Choice Experiment (DCE) survey exploring online help seeking in socially anxious young people. |
16-Sep-2022 | ttu_lng_aqol6_csp | 0.1 | Complete study program to reproduce all steps from data ingest through to results dissemination for a study to map mental health measures to AQoL-6D health utility. |
13-Sep-2022 | aqol6dmap_use | 0.1 | Apply AQoL-6D Utility Mapping Models To New DataThis release includes minor formatting change and an updated version number. |
13-Sep-2022 | ttu_lng_aqol6_csp | 0.0.9.4 | new syntax |
09-Jun-2022 | dce_sa_design | 0.0.9.2 | An R Markdown program to create the experimental design for a Discrete Choice Experiment (DCE) exploring online help seeking in socially anxious young people.This update includes separate sub-routines for designing the pilot survey, analysing pilot survey responses and generating the final survey choice cards. |
08-Jun-2022 | dce_sa_design | 0.0.9.1 | Initial pre-release |
06-Apr-2022 | aqol6dmap_use | 0.0.9.1 | Apply AQoL-6D Utility Mapping Models To New DataThis release updates the .lua filters to address an error in rendering the RMarkdown script to PDF. |
02-Mar-2022 | aqol6dmap_fakes | 0.0.9.0 | This program generates a purely synthetic (i.e. fake - no trace of any real records) population that is reasonably representative of the input data we used for the utility mapping study described in the article https://doi.org/10.1101/2021.07.07.21260129. |
01-Mar-2022 | aqol6dmap_use | 0.0.9.0 | Apply AQoL-6D Utility Mapping Models To New DataInitial release. |
21-Feb-2022 | ttu_lng_aqol6_csp | 0.0.9.3 | Complete study program to reproduce all steps from data ingest through to results dissemination for a study to map mental health measures to AQoL-6D health utility. |
17-Feb-2022 | ttu_lng_aqol6_csp | 0.0.9.2 | Complete study program to reproduce all steps from data ingest through to results dissemination for a study to map mental health measures to AQoL-6D health utility |
17-Feb-2022 | ttu_lng_aqol6_csp | 0.0.9.1 | Complete study program to develop, share and report models that map mental health outcome measures to AQoL-6D health utility. |
17-Feb-2022 | ttu_lng_aqol6_csp | 0.0.90 | Complete study program to develop, share and report models that map mental health outcome measures to AQoL-6D health utility. |
17-Feb-2022 | ttu_lng_aqol6_csp | 0.0.9 | readme edit |
Currently available (as at 08-Jun-2024) releases of subroutines are described below.
Date | Subroutine | Release | Description |
---|---|---|---|
18-Jul-2023 | ttu_mdl_ctlg | 0.1.0.1 | A reporting template for utility mapping models created using the TTU package (https://ready4-dev.github.io/TTU/index.html). This release includes minor bug fixes. |
23-Jun-2023 | ttu_lng_ss | 0.9.0.1 | This sub-routine program extends the R package TTU by providing a toolkit for automatically authoring a first draft of a scientific manuscript from results generated by TTU modules. The program is intended for use and as the last component of TTU’s reporting workflow for utility mapping modelling projects. An example of this workflow is available at: https://doi.org/10.5281/zenodo.6116077 . This program generalises a program that produced the manuscript for a real world study (https://doi.org/10.1101/2021.07.07.21260129). The program can produce manuscripts in PDF / LaTex (example - https://dataverse.harvard.edu/api/access/datafile/4957407) and Word (example - https://dataverse.harvard.edu/api/access/datafile/4957416). It should be noted that the Word output requires some manual editing to adapt section numbering, modify table headers and resize tables to page boundaries.This release fixes a bug that prevented the previous version from rendering. |
20-Jun-2023 | ttu_lng_ss | 0.9.0.0 | This sub-routine program extends the R package TTU by providing a toolkit for automatically authoring a first draft of a scientific manuscript from results generated by TTU modules. The program is intended for use and as the last component of TTU’s reporting workflow for utility mapping modelling projects. An example of this workflow is available at: https://doi.org/10.5281/zenodo.6116077 . This program generalises a program that produced the manuscript for a real world study (https://doi.org/10.1101/2021.07.07.21260129). The program can produce manuscripts in PDF / LaTex (example - https://dataverse.harvard.edu/api/access/datafile/4957407) and Word (example - https://dataverse.harvard.edu/api/access/datafile/4957416). It should be noted that the Word output requires some manual editing to adapt section numbering, modify table headers and resize tables to page boundaries.This release has been modified to support the reporting of utility mapping models derived from both cross-sectional and longitudinal datasets. |
20-Jun-2023 | ttu_mdl_ctlg | 0.1.0.0 | A reporting template for utility mapping models created using the TTU package (https://ready4-dev.github.io/TTU/index.html).This update includes modifications to allow catalogues to be generated for utility mapping models estimate from both cross-sectional data and longitudinal data. |
07-Nov-2022 | mychoice_results | 0.1 | Report results from a Discrete Choice Experiment implemented with the mychoice R package. |
09-Sep-2022 | ttu_mdl_ctlg | 0.0.9.7 | Generate a template utility mapping (transfer to utility) model catalogueThis update fixes an issue with the display size of plots. |
09-Sep-2022 | ttu_lng_ss | 0.8.0.0 | This software extends the R package TTU (https://ready4-dev.github.io/TTU/) by providing a toolkit for automatically authoring a first draft of a scientific manuscript describing a utility mapping study using metadada generated by TTU classes and methods. The extension can produce manuscripts in PDF / LaTex and Word formats - see https://doi.org/10.7910/DVN/D74QMP for examples. It should be noted that the Word output requires some manual editing to adapt section numbering, modify table headers and resize tables to page boundaries.This version fixes some bugs in how software versions were referenced in the generated manuscript. |
29-Jul-2022 | ttu_lng_ss | 0.7.0.0 | This software extends the R package TTU (https://ready4-dev.github.io/TTU/) by providing a toolkit for automatically authoring a first draft of a scientific manuscript describing a utility mapping study using metadada generated by TTU classes and methods. The extension can produce manuscripts in PDF / LaTex (example - https://dataverse.harvard.edu/api/access/datafile/4957407) and Word (example - https://dataverse.harvard.edu/api/access/datafile/4957416). It should be noted that the Word output requires some manual editing to adapt section numbering, modify table headers and resize tables to page boundaries.This version updates outdated filters. |
29-Jul-2022 | ttu_lng_ss | 0.0.9.7 | updated filters and readme |
28-Jul-2022 | ttu_mdl_ctlg | 0.0.9.6 | Generate a template utility mapping (transfer to utility) model catalogueUpdates to filters. |
19-Apr-2022 | ms_tmpl | 0.1.1.0 | A collection of files to provide a template for generating scientific manuscripts describing open source mental health systems models projects that use the ready4 framework.This release is a minor patch to correct an incorrectly specified version number. |
19-Apr-2022 | ms_tmpl | 0.1.1 | updated doi |
19-Apr-2022 | ms_tmpl | 0.1.0 | A collection of files to provide a template for generating scientific manuscripts describing open source mental health systems models projects that use the ready4 framework.This release is a patch to update third party developed .lua filters as the old versions no longer work. |
17-Feb-2022 | ttu_mdl_ctlg | 0.0.9.5 | Generate a template utility mapping (transfer to utility) model catalogue |
17-Feb-2022 | ttu_mdl_ctlg | 0.0.9.4 | updated citation date |
05-Feb-2022 | ttu_lng_ss | 0.6 | Updates for compatibility with specific R package. |
04-Feb-2022 | ttu_mdl_ctlg | 0.0.9.3 | Modification of input parameters to enable reporting of shareable model performance. |
02-Feb-2022 | ttu_mdl_ctlg | Edits to ensure compatibility with specific R package | Minor code edits to ensure that RMD can be rendered into documents using the R package specific. |
01-Feb-2022 | ttu_mdl_ctlg | Iniital release | Initial release of a markdown template to create a catalogue of utility mapping (transfer to utility) models. |
01-Feb-2022 | ttu_mdl_ctlg | 0.0.9.0 | initial commit |
01-Feb-2022 | ms_tmpl | Minor changes to Parent RMDs | This minor update now includes two PDF versions - one based on a default bookdown style and one using the rticles ArXiv template. The naming conventions for the parent files have changed. |
18-Jan-2022 | ms_tmpl | 0.0.9.1 | Updated Markdown files now have only one object (a Ready4showSynopsis module from the ready4 framework) passed to parameters. |
18-Jan-2022 | ms_tmpl | 0.0.9 | Initial release of Markdown files to generate a template scientific manuscript. |
06-Aug-2021 | ttu_lng_ss | 0.5 | Some minor fixes and additional descriptive content in README |
30-Jul-2021 | ttu_lng_ss | V0.4 | Bug fixes for generalised (non AQoL) application. |
29-Jul-2021 | ttu_lng_ss | 0.3 | Minor updates that ensure consistency of abstract treatment between output formats, keep TeX files when outputting to PDF and including TTU and extension version information in outputted manuscript. |
29-Jul-2021 | ttu_lng_ss | 0.2 | version 0.2 |
All current and previous releases of framework and module libraries.
Currently available (as at 08-Jun-2024) releases of module libraries for modelling people are reproduced below.
Date | Package | Release | Description |
---|---|---|---|
29-Jan-2024 | 0.0.0.91125 | Tools for mapping measures routinely collected in youth mental health services to Quality Adjusted Life Years (QALYs). Part of the First Bounce model of primary youth mental health services. This development version of the youthu package has been made available as part of the process of testing and documenting the package.This release corrects package citation information. | |
29-Jan-2024 | 0.0.0.9111 | Tools for mapping measures routinely collected in youth mental health services to Quality Adjusted Life Years (QALYs). Part of the First Bounce model of primary youth mental health services. This development version of the youthu package has been made available as part of the process of testing and documenting the package. | |
27-Oct-2022 | 0.0.0.9015 | migrated in fns from updated analysis program | |
17-Oct-2022 | 0.0.0.9014 | Model youth choices using the ready4 framework.Tools for modelling the choice behaviours of young people relating to their mental health. Implements the ready4 framework for open and modular youth mental health systems models. Supports standardised workflows for the design and analysis of Discrete Choice Experiments. This development version of the youthu package has been made available as part of the process of testing and documenting the package. | |
13-Sep-2022 | 0.0.0.93465 | Tools for developing, reporting and sharing Transfer To Utility (TTU) mapping algorithms that predict health utility from other health measures. This development version of the TTU package has been made available as part of the process of testing and documenting the package.This release corrects package citation information. | |
13-Sep-2022 | 0.0.0.90835 | Tools to standardise the formalising and solving of inverse problems as part of the development of open and modular mental health systems. This development version of the specific package has been made available as part of the process of testing and documenting the package.This release corrects package citation information. | |
13-Sep-2022 | 0.0.0.90535 | Tools to summarise questionnaire responses from youth mental health collections in a single index measure. The main motivation for this package is to facilitate automated scoring, using published publicly available scoring algorithms, of measures relevant to mental health systems models.This release corrects package citation information. | |
13-Sep-2022 | 0.0.0.91085 | Tools to describe and quality assure types of data commonly present in youth mental health collections. The main motivation for this package is to facilitate automated data integrity checks, ensure that methods are applied to the appropriate data structures and streamline reporting of descriptive statistics.This release corrects package citation information. | |
13-Sep-2022 | 0.0.0.9112 | Tools for mapping measures routinely collected in youth mental health services to Quality Adjusted Life Years (QALYs). Part of the First Bounce model of primary youth mental health services. This development version of the youthu package has been made available as part of the process of testing and documenting the package. | |
13-Sep-2022 | 0.0.0.9346 | Tools for developing, reporting and sharing Transfer To Utility (TTU) mapping algorithms that predict health utility from other health measures. This development version of the TTU package has been made available as part of the process of testing and documenting the package. | |
13-Sep-2022 | 0.0.0.9083 | Tools to standardise the formalising and solving of inverse problems as part of the development of open and modular mental health systems. This development version of the specific package has been made available as part of the process of testing and documenting the package. | |
13-Sep-2022 | 0.0.0.9053 | Tools to summarise questionnaire responses from youth mental health collections in a single index measure. The main motivation for this package is to facilitate automated scoring, using published publicly available scoring algorithms, of measures relevant to mental health systems models. | |
13-Sep-2022 | 0.0.0.9108 | Tools to describe and quality assure types of data commonly present in youth mental health collections. The main motivation for this package is to facilitate automated data integrity checks, ensure that methods are applied to the appropriate data structures and streamline reporting of descriptive statistics. | |
08-Sep-2022 | 0.0.0.90532 | updated dpcys | |
08-Sep-2022 | 0.0.0.90531 | updated dpcys | |
08-Sep-2022 | 0.0.0.91081 | updated dpcys | |
21-Feb-2022 | 0.0.0.9338 | Tools for developing, reporting and sharing Transfer To Utility (TTU) mapping algorithms that predict health utility from other health measures. This development version of the TTU package has been made available as part of the process of testing and documenting the package. | |
21-Feb-2022 | 0.0.0.9111 | edits to work with new mdl_ingredients_ls | |
21-Feb-2022 | 0.0.0.9337 | Tools for developing, reporting and sharing Transfer To Utility (TTU) mapping algorithms that predict health utility from other health measures. This development version of the TTU package has been made available as part of the process of testing and documenting the package.Updates in this release include new TTUSynopsis class. | |
21-Feb-2022 | 0.0.0.9079 | Tools to standardise the formalising and solving of inverse problems as part of the development of open and modular mental health systems. This development version of the specific package has been made available as part of the process of testing and documenting the package. | |
17-Feb-2022 | 0.0.0.9335 | Tools for developing, reporting and sharing Transfer To Utility (TTU) mapping algorithms that predict health utility from other health measures. | |
17-Feb-2022 | 0.0.0.9334 | changed dpcy pkgs | |
17-Feb-2022 | 0.0.0.9333 | Increment version number to 0.0.0.9333 | |
17-Feb-2022 | 0.0.0.9332 | updated dpcys | |
17-Feb-2022 | 0.0.0.90780 | Tools to standardise the formalising and solving of inverse problems as part of the development of open and modular mental health systems. | |
17-Feb-2022 | 0.0.0.9078 | Tools to standardise the formalising and solving of inverse problems as part of the development of open and modular mental health systems. | |
16-Feb-2022 | 0.0.0.9077 | fix of transform fn | |
16-Feb-2022 | 0.0.0.9331 | removed all migrated out fns | |
16-Feb-2022 | 0.0.0.9076 | updated investigate methds | |
15-Feb-2022 | 0.0.0.9330 | added TTUReports class and author method | |
15-Feb-2022 | 0.0.0.9075 | Tools to standardise the formalising and solving of inverse problems as part of the development of open and modular mental health systems.This release includes updated author and share methods. | |
15-Feb-2022 | 0.0.0.9074 | Tools to standardise the formalising and solving of inverse problems as part of the development of open and modular mental health systems. | |
15-Feb-2022 | 0.0.0.9048 | Tools to summarise questionnaire responses from youth mental health collections in a single index measure. The main motivation for this package is to facilitate automated scoring, using published publicly available scoring algorithms, of measures relevant to mental health systems models. | |
15-Feb-2022 | 0.0.0.9104 | Tools to describe and quality assure types of data commonly present in youth mental health collections. The main motivation for this package is to facilitate automated data integrity checks, ensure that methods are applied to the appropriate data structures and streamline reporting of descriptive statistics.This release includes updates to plot functions. | |
04-Nov-2021 | 0.0.0.9072 | Version implemented following significant redevelopment of package dependencies. | |
07-Aug-2021 | 0.9095 | Some minor updates to functions and vignettes.For most users the most appropriate manual will be youthu_0.0.0.9095_user.pdf. Developers may prefer to use the more comprehensive version:youthu_0.0.0.9095_developer.pdf | |
04-Aug-2021 | 0.9061 | This release combines changes to the naming conventions of variables included in the example data dictionary, some additional functions migrated in from TTU and an additional vignette.Most users should refer to this manual: youthvars_user_0.0.0.9061.pdfA manual intended for developers is also available: youthvars_developer_0.0.0.9061.pdf. Note the developer version of the manual lists all functions in the package, including helper functions and poorly tested, partially working in development functions that are not intended for end-users. | |
11-May-2021 | 0.0.0.9044 | This release includes a number of new functions, some of which have been migrated from previous versions of the TTU package.Most users should refer to this manual: youthvars_user_0.0.0.9044.pdfA manual intended for developers is also available: youthvars_developer_0.0.0.9044.pdf. Note the developer version of the manual lists all functions in the package, including helper functions and poorly tested, partially working in development functions that are not intended for end-users.A number of vignettes are also available | |
09-Apr-2021 | 0.0.0.9065 | This is the initial release of the youthu (Youth OUtcomes To Health Utility) modelling toolkit.Bundled with this release are vignettes youthu_vignettes.zip which give worked examples of applying the tools in this package and two versions of a manual describing the functions and datasets included in the package.Most users should refer to the end-user version of the manual: youthu_user_0.0.0.9065.pdf.A more extensive manual intended for developers is also available: youthu_developer_0.0.0.9065.pdf. Note the developer version of the manual lists all functions in the package, including helper functions and poorly tested, partially working in development functions that are not intended for end-users. | |
08-Apr-2021 | 0.0.0.9018 | updated dpcy | |
08-Apr-2021 | 0.0.0.9017 | This release includes a number of naming convention changes and improvements to the algorithm generated manual.Most users should refer to this manual: youthvars_user_0.0.0.9017.pdfA manual intended for developers is also available: youthvars_developer_0.0.0.9017.pdf. Note the developer version of the manual lists all functions in the package, including helper functions and poorly tested, partially working in development functions that are not intended for end-users.A number of vignettes are also available |
Currently available (as at 08-Jun-2024) releases of module libraries for modelling places are reproduced below.
Date | Package | Release | Description |
---|---|---|---|
01-Mar-2023 | Initial release of migration from priate repository. | aus is a set of ready modules for modelling Australian spatial data. This release is an untested update of code used in the deprecated version of the Springtides app. | |
09-Feb-2023 | 0.0.0.9215 | Very preliminary in development code - not for use by third parties. |
We applied our youthvars and TTU modules to developing a dataset of transfer to utility models that can be used to predict adolescent weighted AQoL-6D health utility from a range of psychological distress, depression, anxiety and functioning predictors. Vignettes from the youthu R package illustrate (using fake data) how these models can be used to derive Quality Adjusted Life Year predictions. A preprint describing this study is now available at: https://www.medrxiv.org/content/10.1101/2021.07.07.21260129v3. The three toolkits, the dataset and the pre-print are outputs of the Spring To Life model of people.
Combined Springtides and University of Sydney model predictions
One of the preliminary applications of the Springtides model was to provide initial predictions, early in the COVID-19 pandemic about the potential mental health impacts of the pandemic in the absence of government intervention. That original analysis was undertaken in May 2020 in collaboration with colleagues at the University of Sydney and was subject to media coverage, both at the time and in December 2020.
Code-libraries and datasets for Springtides will be publicly released in the future, but a brief overview of the modelling approach is described from the 55 minute mark of the below webinar.
readyforwhatsnext spatial systems dynamics model poster
International academic conference poster presentations relating to the readyforwhatsnext project have been made available in the project’s scientific summaries dataset https://doi.org/10.7910/DVN/QBZFQV. The two posters that have been uploaded summarise the project’s conceptual model and how its systems dynamics model was adapted to develop the Springtides spatial epidemiology simulator.
readyforwhatsnext resilience conceptual model poster